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--- software:rewinfomap [2010/11/07 13:32]
eapontep
+++ software:rewinfomap [2010/12/07 11:58] (current)
eapontep
@@ Line 20: / Line 20: @@
   - As a first step, you should download the last version of gdbm.
   - Untar the .gz file and go into the created directory.
-  - Try: <file bash>./configure</file>This command should try to configure the program to your system specifications. It is highly likely that this process fails. The most likely reason is that a system library called libtool is not version compatible. To check your version of this program (in ubuntu):<file bash>apt-cache policy libtool</file>. I presuppose you have libtool installed in your computer. You probably have a newer version of libtool as the one presuppose by the gdbm package. You would have to find the location of the following file: ltmain.sh. Once you have done that edit the
+  - Try: <file bash>./configure</file>This command should try to configure the program to your system specifications. It is highly likely that this process fails. The most likely reason is that a system library called libtool is not version compatible. To check your version of this program (in ubuntu):<file bash>apt-cache policy libtool</file>. I presuppose you have libtool installed in your computer. You probably have a newer version of libtool as the one presuppose by the gdbm package. The solution I found was to run:<file bash>autoconf -f -oconfigure</file>
+  - The last overwrote all the libtool-related files in the directory. Now you can run <file bash>make</file> safely. If you obtain the following error -which actually is highly unlikely<file bash>checking build system type... Invalid configuration `x86_64-unknown-linux-gnu': machine `x86_64-unknown' not recognized</file>you will need to deceive the program. Add before any command:<file bash>linux32</file>
+  - You might also have problems with the ANSI c headers. To solve this problem<file bash>sudo apt-get install libc6-dev</file>
+==== Testing =====
+The first step in order to build a model is to choose a directory where the models will be created. This is done by setting an environment variable <file bash>INFOMAP_WORKING_DIR=/home/jrandom/infomap_models
+export INFOMAP_WORKING_DIR</file>
+Afterwards run build the model. Informap accepts two formats: a single file where documents are divided by xml markers or as set of files, where every file contains exactly one document. I decided to use this second option. As input, there should be a file specifying the name of file containing a document.<file bash>infomap-build -m /usr/local/share/corpora/manyNames.txt many_01</file>
+Remember to add Infomap to your PATH variable. The installation includes a manual of all the applications available.
+In corpora directory, you will find a simple py script for building a corpora from a file where every line is a document. Afterwards I used the following command:<file bash>infomap-build -m /net/data/CL/projects/wordspace/software_tests/corpora/infoCorpus/directory.txt firstModel</file>
+In order to change the default configuration of the model, you would need to change the file: ??. I ran tests only with the default configuration (including reduction to 100 dimension). 'directory.txt' is a file containing the name of every file-document in the directory where the corpus is saved. Although the manual doesn't specify what markers should be used, including every file-name in a new line works out. The option '-m' (or '-sf' for single file) specifies the type of corpus. Finally, 'fistModel' is the name of the model created in 'INFOMAP_WORKING_DIR'.
+Two tests were run and the resulting models are available in the server: firstModel (using approximately 30000 documents -minus corrupted documents- in the Wiki Corpus. Constructing the model took me less than five minutes and the resulting directory occupies 65Mb.
+{{:software:vizinfo1.png|}}
+A second test was conducted again with the Wiki-Corpus, this time with 200000 documents. Constructing the model take less than 10 minutes. The resulting directory occupies 312Mb
+{{:software:vizinfo2.png|}}
+In order to access the models, the standard command is<file bash>associate [<options>] <model> <word></file>
+Among the option, it is possible to obtain a word vector, the nearest neighbors of a word, or the word-document vector. Consider:<file bash>associate -m <pathToTargetModel> -d -i d -n 10 document_100.txt
+document_100.txt:1.000000
+document_80694.txt:0.925041
+document_162763.txt:0.919077
+document_95383.txt:0.917450
+document_176694.txt:0.915522
+document_155572.txt:0.914388
+document_197410.txt:0.912332
+document_101202.txt:0.909776
+document_144550.txt:0.909703
+document_164895.txt:0.908825
+</file>
+This command retrieves the information from the model in <pathToTargetModel>, in particular, the output should be again 10 (-n 10 ) documents (-d ), the input should be a document (- i d ). The input is the document 'document_100.txt'. (In the server you would find the document in './infoCorpus'). After performing <file bash>associate -m <pathToTargetModel> -w -i d -n 10 document_100.txt</file>
+i.e., looking for words instead of document close to 'document_100.txt' the result was:<file bash>seemingly:0.731527
+angry:0.699753
+kid:0.693340
+girlfriend:0.676348
+jake:0.658571
+boyfriend:0.656249
+scare:0.652340
+vicious:0.651290
+feel:0.649538
+bizarre:0.643888</file>
+This turned out to be the entry of Kubricks film "The Clock Work Orange" :-). The most related document corresponds to the film  [[http://www.youtube.com/watch?v=tcSMDqXT52s|"Pretty in Pink"]]
+An interesting option provided by Infomap is to install a model. This option is preferred for fina results, which should be available to several users. Following the manual, installing a model is not much more than moving a selected number of files from a non-installed model directory to a directory available system-wide. This option is intended to keep intermediate and final results apart.

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